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Rare case of T cell lymphoma post-CAR T therapy uncovered through multiomic profiling

Jerina Hoxha

21.2.25

Study provides insights into clonal evolution following CAR T and bispecific antibody treatment in multiple myeloma

A recent study published in Nature Medicine reports a rare but significant case of a patient developing peripheral T cell lymphoma following immunotherapy for multiple myeloma. The paper, "Multiomic profiling of T cell lymphoma after therapy with anti-BCMA CAR T cells and GPRC5D-directed bispecific antibody ", co-authored by CERTAINTY collaborators from University Hospital Leipzig and Fraunhofer IZI, applies comprehensive multiomic analysis to trace the cellular origins and progression of this unexpected event.


Background

A 63-year-old male patient received BCMA-targeted CAR T-cell therapy (ciltacabtagene autoleucel) followed by a GPRC5D × CD3 bispecific antibody (talquetamab) to treat early relapse of multiple myeloma. Nine months after CAR T cell treatment, the patient developed symptomatic leukemic peripheral T cell lymphoma involving the skin and intestine.


Key Findings

  1. Detection of CAR-positive lymphoma

    Longitudinal single-cell RNA and T cell receptor sequencing identified two hyperexpanded CAR-carrying T cell clones in blood and bone marrow. These cells showed an exhausted effector-memory T cell transcriptional profile and were sensitive to dexamethasone.

  2. Spatial and genomic confirmation

    Aberrant CAR-expressing T cells were confirmed in skin lesions through spatial transcriptomics. Whole-genome sequencing revealed three distinct integration sites in ZGPAT, KPNA4, and polycomb-associated noncoding RNAs.

  3. Evidence of clonal evolution

    The lymphoma appeared to arise from a TET2-mutated precursor cell, which had acquired additional mutations including subclone-specific loss of heterozygosity and secondary events.


Conclusion

This case study highlights the value of advanced sequencing technologies in identifying and understanding rare outcomes following T cell–redirecting immunotherapy. It demonstrates that both genetic modifications and pre-existing vulnerabilities can contribute to secondary tumour development. The findings offer critical insights into the biology of CAR-positive T cell lymphomas and underscore the importance of vigilant molecular monitoring.


Access the Publication

Read the article in Nature Medicine: https://www.nature.com/articles/s41591-025-03499-9

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© Artur - stock.adobe.com / Fraunhofer IZI

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This project was funded by the European Union under Grant Agreement number 101136379. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the Health and Digital Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

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